Before accepting an application for any permit required by Section 57.324, the Department will collect the fees established by the most current cost-recovery schedule published, as provided by Section 57.106.6.3 and applicable thereto. Fees established by the procedure set forth in Section 57.106.6.3 shall apply to permits for all occupancies at a flat rate of $300, plus nine cents per square foot of ACM abated over 1,000 square feet.